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<i>Research Tools</i></a></h1>
<a href="body-j.html">
<img src="japanese.gif" alt="To Japanese"></a>
<img src="/~jun/cgi-bin/Count.cgi?df=res_tools.dat&dd=D&ft=1&comma=t"
alt="******">
have accessed since Jan 1,1995.
<font size="-1">
<dl>
<!--
<dt> <a target="_top" href="http://www.ensembl.org/Tyrannosaurus_rex/">
<i>T. rex</i> Genome</a> is available on Ensembl!!!
-->
<dt> <a target="_top" href="http://nocardia.nih.go.jp/">
<i>Nocardia farcinica</i> Genome Project</a>
<dt> <a href="http://avermitilis.ls.kitasato-u.ac.jp/" target="_top">
<i>Streptomyces avermitilis</i> Genome Project</a>
<dt> <a href="/Mypet/" target="_top">
<i>Mycoplasma penetrans</i> Genome Project</a>
<dt> <a target="_top"
href="http://www.cdc.gov/mmwr/preview/mmwrhtml/mm5126a1.htm">
<font style="background:#ff0066">Real VRSA emerged!</font></a>
(MMWR July 5, 2002 / 51(26):565-567)
<dt> Genome sequences of
<a href="#Mu50">Mu50</a> and
<a href="#N315">N315</a> have been COMPLETED!
<!--
<dt> <a target="_top" href="http://www.mcmaster.ca/inabis98/">
The 5th Internet World Congress on Biomedical Sciences</a>
(Dec. 7-16)
<dt> <a href="journal.html#asmj"><i>Free trial period! </i>
ASM journals are now available free of charge.</a>
-->
<dt> <a href="http://www.expasy.ch/announce/sp_98sum.html">
SWISS-PROT will be charged.</a>
<!--
<dt> Changed the URL of this page to:
<dd> <a target="_top" href="http://www.nih.go.jp/~jun/research/">
``http://www.nih.go.jp/~jun/research/</a>''.
Sorry for inconvenience.
-->
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<table cellpadding=0 cellspacing=0 width="100%" bgcolor="#666666">
<tr align="center" valign="middle">
<td><font size="-2"><a href="whatsnew.html">NEW</a></font>
<td><font size="-2"><a href="#top">TOP</a></font>
<td><font size="-2"><a href="body.html">DATABASE</a></font>
<td><font size="-2"><a href="anal.html">ANAL</a></font>
<td><font size="-2"><a href="doc.html">DOC</a></font>
<td><font size="-2"><a href="journal.html">JOURNAL</a></font>
<td><font size="-2"><a href="soft.html">SOFT</a></font>
<td><font size="-2"><a href="supplier.html">SUPPL</a></font>
<td><font size="-2"><a href="others.html">OTHERS</a></font>
<td><font size="-2"><a href="#bottom">BTTM</a></font>
<td><font size="-2"><a target="_top" href="body.html">NOFRAME</a></font>
</table>
<h2><a name="db">Database Retrieval</a></h2>
<!-- 細胞株、遺伝子などの実物をコレクションしているもの -->
<h3><a name="db_collection">
- Cell & Gene Collection</a></h3>
<ul>
<li> <a target="_top" href="http://www.atcc.org/">
ATCC</a> (American Type Culture Collection)
<li> <a target="_top" href="http://www.fgsc.net/">
FGSC</a> (Fungal Genetics Stock Center)
<li> JCRB (Japan Cancer Research Resources Bank):
<a target="_top" href="/yoken/genebank/">Gene Bank</a> |
<a target="_top" href="http://cellbank.nihs.go.jp/">
Cell Bank</a>
<li> <a target="_top" name="nbrc"
href="http://www.nbrc.nite.go.jp/e-home/index-e.html">
NBRC</a> (including IFO collection)
<li> <a target="_top" name="nbrp_byogen"
href="http://wdcm.nig.ac.jp/byogen/">
NBRP</a> (Natinal Bioresource Project ``Pathogenic Microbes'')
<li> <a target="_top" href="http://wdcm.nig.ac.jp/">
WFCC World Data Center for Microorganisms (WDCM)</a>
<ul>
<li> <a target="_top" href="http://www.jcm.riken.go.jp/">
JCM</a>
<li> <a target="_top" href="http://wdcm.nig.ac.jp/wdcm/JFCC.html">
JFCC</a> (Japan Federation for Culture Collections)
</ul>
<li> <a target="_top" href="http://www.rtc.riken.go.jp/">
RIKEN GENE BANK</a>
<li> Vector:
<ul>
<li> <a target="_top" name="cvector"
href="http://www.shigen.nig.ac.jp/cvector/cvector.html">
The Cloning Vector Collection</a>
<li> <a target="_top"
href="http://www.cbs.knaw.nl/nccb/">
NCCB vector database</a>
- search by vector name or properties
</ul>
</ul>
<!-- 複数のデータベースを相互に結びつけてあるもの -->
<h3><a name="db_linked">- Linked Database</a></h3>
<ul>
<li> <a target="_top" href="http://www.genome.ad.jp/dbget/dbget.links.html">
DBGET</a> (Genome Net)
<li> <a target="_top" href="http://srs.ebi.ac.uk/">
SRS</a> (Network Browser for Databanks in Molecular Biology)
<li> <a target="_top" href="http://www.ncbi.nlm.nih.gov/Entrez/">
<font size="+1">Entrez</font></a> (NCBI):
<a target="_top"
href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Nucleotide">
Nucleotide</a> |
<a target="_top"
href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Protein">
Protein</a> |
<a target="_top" href="http://www.pubmed.gov/">
PubMED (full MEDLINE)</a>
<img src="smile.gif" alt=":-)">
<li> <a target="_top"
href="http://getentry.ddbj.nig.ac.jp/">
getentry</a>
<li> Pathway:
<ul>
<li> <a target="_top" name="wit"
href="http://wit.mcs.anl.gov/">
WIT</a> - What Is There?
<li> <a target="_top" name="kegg"
href="http://www.genome.ad.jp/kegg/kegg.html">
KEGG</a> - Kyoto Encyclopedia of Genes and Genomes
</ul>
</ul>
<h3><a name="db_nuclprot">- Nucleic Acid & Protein</a></h3>
<ul>
<li> <a target="_top" name="dbcat"
href="http://www.infobiogen.fr/services/dbcat/">
DBCAT</a> - the public catalog of database
</ul>
<!-- 核酸だけ -->
<ul>
<li> <a target="_top" name="miyajima_codon"
href="http://www.kazusa.or.jp/java/codon_table_java/">
Codon Table</a>
<font color="#ff0000">[Java]</font>
<li> <a target="_top" name="CUTG"
href="http://www.kazusa.or.jp/codon/">
CUTG</a> - searchable index of codon usage tables
<li> <a target="_top" name="today"
href="http://watson.nih.go.jp/new/latest.html">
DDBJ/GenBank Daily Updates</a> - today's new entries
<li> EPD (Eukaryotic Promoter Database):
<a target="_top" href="http://www.embl-heidelberg.de/srs/srsc?-id||781260221_129.186.4.14||-info||EPD">
EBI</a> |
<a target="_top" href="http://www.genome.ad.jp/htbin/www_bfind?epd">
Genome Net</a>
<li> EST (Expressed Sequence Tags):
<a target="_top" name="est" href="http://www.ncbi.nlm.nih.gov/dbEST/">
NCBI</a> |
<a target="_top" name="dbCFC"
href="http://cytokine.medic.kumamoto-u.ac.jp/">
dbCFC</a> (cytokine)
<li> <a target="_top" name="genecards"
href="http://bioinformatics.weizmann.ac.il/cards/">
GeneCards</a> - human genes, proteins and diseases
<li> <a target="_top" href="http://www3.ncbi.nlm.nih.gov/Omim/">
OMIM</a> (Online Mendelian Inheritance in Man)
<li> <a target="_top" name="opd" href="http://www.cme.msu.edu/OPD/">
OPD</a> (Oligonucleotide Probe Database)
<li> <a target="_top" href="http://rebase.neb.com/rebase/rebase.html">
REBASE</a> (Restriction Enzyme Database)
<li> Ribosome:
<ul>
<li> <a target="_top" name="rdp" href="http://rdp.cme.msu.edu//">
RDP</a> <font size=-1>(The Ribosomal Database Project)</font>
<li> <a target="_top" href="http://rrndb.cme.msu.edu/">
rrndb</a>
<li> <a target="_top" href="http://oberon.fvms.ugent.be:8080/rRNA/">
The rRNA WWW Server</a>
<li> <a target="_top" href="http://rose.man.poznan.pl/5SData/">
5S Ribosomal RNA database</a>
</ul>
<li> Stable RNA:
<ul>
<li> <a target="_top"
href="http://jwbrown.mbio.ncsu.edu/RNaseP/home.html">
RNase P database</a>
<li> <a target="_top"
href="http://mbcr.bcm.tmc.edu/smallRNA/smallrna.html">
Small RNA database</a>
<li> <a target="_top"
href="http://psyche.uthct.edu/dbs/SRPDB/SRPDB.html">
SRPDB</a>
<li> <a target="_top"
href="http://psyche.uthct.edu/dbs/uRNADB/uRNADB.html">
uRNA database</a>
<li> <a target="_top" href="http://www.indiana.edu/%7Etmrna/">
tmRNA website</a>
<li> <a target="_top"
href="http://psyche.uthct.edu/dbs/tmRDB/tmRDB.html">
tmRNA database</a>
</ul>
<li> STS (Sequence Tagged Sites):
<a target="_top" href="http://www.ncbi.nlm.nih.gov/dbSTS/">
NCBI</a> |
<a target="_top" name="E-PCR" href="http://www.ncbi.nlm.nih.gov/STS/">
Electronic PCR</a> (search STSs)
<li> <a target="_top" name="TargetFinder"
href="http://hercules.tigem.it/TargetFinder.html" >
TargetFinder</a> - searches for candidate target genes of
DNA-binding proteins.
<li> <a target="_top"
href="gopher://gopher.nih.gov/77/gopherlib/indices/tfd/index">
TFD</a> (Transcription Factor Database)
<li> <a target="_top" name="transfac"
href="http://transfac.gbf-braunschweig.de/TRANSFAC/">
TRANSFAC</a> - a database on eukaryotic cis-acting regulatory DNA
elements and trans-acting factors.
<li> <a target="_top" name="trrd"
href="http://www.bionet.nsc.ru/trrd/">
TRRD</a> (Transcription Regulatory Regions Databese)
<li> <a target="_top" name="vector"
href="http://seq.yeastgenome.org/vectordb/">
Vector db</a>
</ul>
<!-- データサブミッション -->
<ul>
<li> <a target="_top" name="sakura" href="http://sakura.ddbj.nig.ac.jp/">
<font size="+1">SAKURA</font></a> - DDBJ DNA data submission system
<img src="smile.gif" alt=":-)">
<li> <a target="_top" name="autodep" href="http://pdb.rutgers.edu/adit/">
AutoDep</a> - PDB data submission
</ul>
<!-- タンパクだけ -->
<ul>
<li> 2D gel protein databases:
<a target="_top"
href="http://www.expasy.ch/ch2d/ch2d-top.html">SWISS-2DPAGE</a> |
<a target="_top" name="DCHGR_2DPAGE"
href="http://biobase.dk/cgi-bin/celis">
Danish Centre for Human Genome Research</a>
<li> <a target="_top" name="antibodyresource"
href="http://www.antibodyresource.com/">
Antibody Resource</a>
<li> <a target="_top" href="http://yeamob.pci.chemie.uni-tuebingen.de/">
The AAA Superfamily</a>
- ATPases Associated with various cellular Activities
<li> <a target="_top"
href="http://www.bis.med.jhmi.edu/Dan/proteins/ec-enzyme.html">
EC-Enzyme</a> - an enzyme classification database
<li> <a target="_top" href="http://histo.cryst.bbk.ac.uk/">
Histo</a> - dedicated to the investigation of the relationship
between sequence, structure and function of the proteins of
the Major Histocompatibility Complex (MHC)
<li> <a target="_top" href="http://molbio.info.nih.gov/cgi-bin/pdb">
Molecules R US</a> - PDB database search
<img alt=":-)" src="smile.gif">
<li> <a target="_top" href="http://www.chem.qmw.ac.uk/iubmb/enzyme/">
NC-IUBMB</a> - Nomenclature Committee of the International Union of Biochemistry and Molecular Biology
<li> <a target="_top"
href="http://www-nbrf.georgetown.edu/pir/searchdb.html">
NRL_3D</a> - a sequence-structure database
<li> <a target="_top" name="ProteinProspector"
href="http://prospector.ucsf.edu/">
ProteinProspector</a>
- search with peptide-mass fingerprinting data from MS
<li> <a target="_top"
href="http://www.biochem.ucl.ac.uk/bsm/dbbrowser/OWL/OWL.html">
OWL</a> - a non-redundant composite of 4 publicly-available
primary sources: SWISS-PROT, PIR (1-3),
GenBank (translation) and NRL-3D
<li> <a target="_top" name="pdb" href="http://www.rcsb.org/pdb/">
PDB</a> - Protein Data Bank
<li> <a target="_top" href="http://pfam.janelia.org/">
Pfam</a> - a high-quality comprehensive collection of
protein domain families
<li> <a target="_top" href="http://www.psort.org/">
PSORT</a> - PSORT I, II, PSORTb, iPSRT, etc.
Prediction of protein subcellular localization
<li> <a target="_top"
href="http://www.genome.ad.jp/dbget-bin/www_bfind?prf">
PRF</a> - a database of protein primary structures
<li> ProDom:
<a target="_top"
href="http://protein.toulouse.inra.fr/prodom.html">Toulouse</a>
<li> <a target="_top" href="http://www.expasy.ch/prosite/">
PROSITE</a>
<li> <a target="_top" href="http://scop.mrc-lmb.cam.ac.uk/scop/">
SCOP</a> - Structural Classification of Proteins
<li> <a target="_top" href="http://www.expasy.ch/sprot/sprot-top.html">
SWISS-PROT</a>
<li> <a target="_top" href="http://www.expasy.ch/tools/tagident.html">
TagIdent</a> - a tool which allows the retrieval of
the SWISS-PROT entries closest to a given pI and Mw.
</ul>
<!-- 核酸とタンパクの両方 生物種別データベース-->
<h3><a name="db_organism">- Model Organisms</a></h3>
<ul>
<li> <a target="_top" name="GOLD"
href="http://www.genomesonline.org/">
GOLD<sup><font size="-2">TM</font></sup>: Genomes OnLine Database HomePage</a> - better than TIGR<img src="smile.gif">
<li> <a target="_top" href="http://www.tigr.org/">
The Institute for Genome Research</a> (TIGR)
<li> <a target="_top" href="http://www.jgi.doe.gov/">
DOE Joint Genome Institute</a> (JGI)
<li> <a target="_top" href="http://www.sanger.ac.uk/Projects/">
The Sanger Center</a>
<li> <a target="_top" href="http://www.nature.com/genomics/">
Nature Genome Gateway</a>
<li> <a target="_top"
href="http://www.sciencemag.org/feature/plus/sfg/special/">
Science magazine Special Issues</a>
<!--
<li> <a target="_top"
href="http://www.ncbi.nlm.nih.gov/BLAST/unfinishedgenome.html">
BLAST with unfinished microbial genomes</a> (NCBI)
-->
</ul>
<ul>
<li> <font size="+1"><a target="_top"
href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=Genome">
Entrez Genomes</a></font>
<li> <a target="_top" href="http://www.ensembl.org/">
Ensembl</a>
<li> <a target="_top" href="http://www.gdb.org/">
GDB</a> - The Genome Database
<li> <a target="_top" name="gib"
href="http://gib.genes.nig.ac.jp/">
Genome Information Broker for Microbial Genomes</a>
<font color="#ff0000">[Java]</font>
<li> <a target="_top" name="GN"
href="http://www.mpimg-berlin-dahlem.mpg.de/~andy/GN/">
Genome Navigator</a>
<font color="#ff0000">[Java]</font>
<li> <a target="_top" name="MBGD" href="http://mbgd.genome.ad.jp/">
MBGD</a> - Microbial Genome Database for Comparative Analysis
<li> <a target="_top"
href="http://pedant.mips.biochem.mpg.de/">
PEDANT</a> - Protein Extraction, Description, and ANalysis Tool
</ul>
<ul>
<li> <a target="_top" href="http://www.tigr.org/tdb/mdb/afdb/afdb.html">
AFDB</a> - The <i>Archaeoglobus fulgidus</i> Genome Database
<li> <a target="_top" href="http://ws4.niai.affrc.go.jp/jgbase2.html">
Animal Genome Databese</a> - pig, cattle, horse, mouse, human.
available <a target="_top"
href="http://ws4.niai.affrc.go.jp/dbsearch2/java/linkage/jgbase.html">
Java-based clickable map</a>
<li> <a target="_top"
href="http://klab.agsci.colostate.edu/acedb/AaeDB-acedb.html">
AaeDB</a> - <i>Aedes aegypti</i> genomic database
<li> <i>Bacillus subtilis</i>:
<ul>
<li> <a target="_top" href="http://bacillus.genome.ad.jp/">
BSORF</a>
<li> <a target="_top" href="http://www.pasteur.fr/Bio/SubtiList/">
SubtiList</a>
<li> <a target="_top" href="http://pbil.univ-lyon1.fr/nrsub/nrsub.html">
NRSub</a> - A Non-Redundant Database for <i>Bacillus subtilis</i>
</ul>
<li> <a target="_top" href="http://www.tigr.org/tdb/mdb/bbdb/bbdb.html">
BBDB</a> - The <i>Borrelia burgdorferi</i> Genome Database
<li> <a target="_top" name="C.elegans"
href="http://www.sanger.ac.uk/Projects/C_elegans/">
<i>C. elegans</i></a>
<li> <a target="_top" name="C.albicans"
href="http://sequence-www.stanford.edu/group/candida/">
<i>Candida albicans</i></a>
<li> <a target="_top" href="http://www.kazusa.or.jp/cyano/cyano.html">
CyanoBase</a> - <i>Synechocystis sp.</i>
<li> <i>Escherichia coli</i>:
<ul>
<li> <a target="_top" href="http://www.genome.wisc.edu/">
<i>E. coli </i> Genome Project</a>
<li> <a target="_top" href="http://cgsc.biology.yale.edu/">
CGSC</a> (<i>E. coli</i> Genetic Stock Center)
<li> <a target="_top" name="colibri"
href="http://www.pasteur.fr/Bio/Colibri.html">
Colibri</a>
<li> <a target="_top"
href="http://www.ecocyc.org">
EcoCyc</a> -Encyclopedia of <i>E. coli</i> Genes and Metabolism
<li> <a target="_top" href="http://web.bham.ac.uk/bcm4ght6/res.html">
The <i>E. coli</i> Index</a>
<li> <a target="_top" name="ecoli_www"
href="http://mol.genes.nig.ac.jp/ecoli/">
<i>E. coli</i> WWW Home Page</a>
<font color="#ff0000">[Java]</font>
<li> <a target="_top" name="genobase"
href="http://ecoli.aist-nara.ac.jp/">
<i>GenoBase</i></a> (W3110)
</ul>
<li> <a target="_top" href="http://flybase.bio.indiana.edu/">
FlyBase</a> - a database of the <i>Drosophila</i> genome
<li> <a target="_top" href="http://www.fugu-sg.org/">
Fugu Genome Project</a>
<li> <a target="_top" href="http://www.tigr.org/tdb/mdb/hpdb/hpdb.html">
HPDB</a> - The <i>Helicobacter pylori</i> Genome Database
<li> <a target="_top" name="hidb"
href="http://www.tigr.org/tdb/mdb/hidb/hidb.html">
HIDB</a> - The <i>Haemophilus influenzae</i> Rd Genome Database
<li> <a target="_top" href="http://hiv-web.lanl.gov/">
HIV Database</a> (Los Alamos Natl. Inst.)
<li> <a target="_top"
href="http://www.genomecorp.com/genesequences/methanobacter/abstract.html">
<i>Methanobacterium thermoautotrophicum</i></a>
<li> Human:
<ul>
<li> <a target="_top" name="HGScience"
href="http://www.sciencemag.org/content/vol291/issue5507/index.shtml">
Science 16 Feb., 2001</a>
<li> <a target="_top" name="HGNature"
href="http://www.nature.com/genomics/human/index.html">
Nature 15 Feb., 2001</a>
<li> <a target="_top" href="http://hgp.gsc.riken.go.jp/chr21/">
Chromosome 21</a>
<li> <a target="_top" name="celera" href="http://www.celera.com/">
Celera</a>
<li> <a target="_top" name="hgs"
href="http://www.ncbi.nlm.nih.gov/genome/seq/HsHome.shtml">
Human Genome Sequencing</a> (NCBI)
</ul>
<li> <a target="_top" name="mgi" href="http://www.informatics.jax.org/">
MGI</a> - Mouse Genome Informatics
<li> <a target="_top" name="mjdb"
href="http://www.tigr.org/tdb/mdb/mjdb/mjdb.html">
MJDB</a> - The <i>Methanococcus jannaschii</i> Genome Database
<li> <i>Mycobacteria</i>:
<ul>
<li> <a target="_top"
href="http://www.sanger.ac.uk/Projects/M_tuberculosis/">
<i>Mycobacterium tuberculosis</i></a> H37Rv
<li> <a target="_top" href="http://kiev.physchem.kth.se/MycDB.html">
MycDB</a> - Mycobacterium database
<li> <a target="_top" href="http://www.pasteur.fr/Bio/TubercuList/">
TubercuList</a>
</ul>
<li> <i>Mycoplasma:</i>
<ul>
<li> <a target="_top" name="mgdb"
href="http://www.tigr.org/tdb/mdb/mgdb/mgdb.html">
MGDB</a> - The <i>Mycoplasma genitalium</i> Genome Database
<li> <a target="_top"
href="http://www.zmbh.uni-heidelberg.de/M_pneumoniae/MP_Home.html">
MYCOPLASMA PNEUMONIAE GENOME PROJECT</a>
<li> <a target="_top" name="mypet" href="/Mypet/">
<i>Mycoplasma penetrans</i> Genome</a>
</ul>
<li> <a target="_top" name="nfar" href="http://nocardia.nih.go.jp/">
<i>Nocardia farcinica</i> IFM 10152</a> <img src="smile.gif">
<li> <a target="_top" name="protist"
href="http://urchin1.biol.metro-u.ac.jp/WWW/PDB/menu.html">
Protist Databases</a> - about 600 images (mostly PhotoCD images)
of protists by taxa or by subjects, protocols,
and photos of protistoloists
<li> <a target="_top" href="http://www.pseudomonas.com/">
Pseudomonas Genome Project</a> - <i>Pseudomonas aeruginosa</i>
<li> <a target="_top" href="http://www.bio.nite.go.jp/E-home/ot3db-e.html">
<i>Pyrococcus horikoshii</i> OT3</a>
<li> <a target="_top" name="ratmap" href="http://ratmap.gen.gu.se/">
RATMAP</a>
<li> <i>Saccharomyces cerevisiae</i>:
<ul>
<li> <a target="_top"
href="http://genome-www.stanford.edu/Saccharomyces/">
SGD</a> - <i>Saccharomyces</i> Genome Database
<li> <a target="_top"
href="http://speedy.mips.biochem.mpg.de/mips/yeast/">
The Yeast Genome Project</a>
</ul>
<li> <a target="_top" href="http://www.sanger.ac.uk/Projects/S_pombe/">
<i>Schizosaccharomyces pombe</i></a>
<li> <i>Staphylococcus aureus</i>:
<ul>
<li> <a target="_top" name="Mu50"
href="http://w3.grt.kyushu-u.ac.jp/VRSA/">
Mu50</a> COMPLETE!
<li> <a target="_top" name="N315"
href="http://www.bio.nite.go.jp/dogan/n315/">
N315</a> COMPLETE!
<li> <a target="_top" name="saureus"
href="http://www.genome.ou.edu/staph.html">
The University of Oklahoma</a>
<li> <a name="saureus_sanger"
href="http://www.sanger.ac.uk/Projects/S_aureus/">
Sanger Center</a>
</ul>
<li> <a target="_top" name="avergenome"
href="http://avermitilis.ls.kitasato-u.ac.jp/">
<i>Streptomyces avermitils</i></a>
<li> <a target="_top" href="http://www.sanger.ac.uk/Projects/S_coelicolor/">
<i>Streptomyces coelicolor</i> A3(2)</a>
<li> <a target="_top" name="Vibrio_cholerae"
href="http://www.tigr.org/tdb/CMR/gvc/htmls/SplashPage.html">
<i>Vibrio cholerae</i></a>
<li> <a target="_top" href="http://www.proteome.com/">
YPD</a> - The Yeast Protein Database
</ul>
<h3><a name="db_compound">- Compounds</a></h3>
<ul>
<li> <a target="_top" name="chemfinder"
href="http://chemfinder.camsoft.com/">
ChemFinder</a>
<li> <a target="_top" name="chemidplus"
href="http://chem.sis.nlm.nih.gov/chemidplus/">
ChemIDPlus</a>
<li> <a name="ginc" href="http://wwwdb.mhlw.go.jp/ginc/">
GINC (Global Information Network on Chemicals) Database Serach</a>
<li> <a target="_top" name="lipidbank"
href="http://lipidbank.jp/">
LIPID BANK for Web</a>
<li> <a target="_top" name="Klotho"
href="http://www.biocheminfo.org/klotho/">
Klotho: Biochemical Compounds Declarative Database</a>
<li> <a target="_top" name="chemistrywebbook"
href="http://webbook.nist.gov/chemistry/">
NIST Chemistry WebBook</a>
- chemical and physical property data for chemical species
<li> <a target="_top" name="nadb"
href="http://www.nih.go.jp/~jun/NADB/search.html">
Novel Antibiotics DataBase (NADB)</a>
- novel substances published in the Journal of Antibiotics
<li> <a target="_top" name="pubchem"
href="http://pubchem.ncbi.nlm.nih.gov/">
PubChem</a>
- provides information on the biological activities of small molecules
<li> <a target="_top" name="sdbs"
href="http://www.aist.go.jp/RIODB/sdbs/cgi-bin/cre_index.cgi?lang=jp ">
SDBS</a> - Spectral Database for Organic Compounds
</ul>
<h3><a name="db_literature">- Literature</a></h3>
<ul>
<li> <a target="_top" name="actarts"
href="http://www.nih.go.jp/~jun/act/articles/">
Actinomycetes Related Articles Appeared in PubMed</a>
<!--
<li> <a target="_top" name="AIDSpatent" href="http://app.cnidr.org/">
AIDS Patent Databases</a>
-->
<li> <a target="_top" name="opac"
href="http://ss.cc.affrc.go.jp/ric/opac/opacE.html">
Japan OPAC (On-line Public Access Catalog) List</a>
<li> <a target="_top" name="copac" href="http://copac.ac.uk/copac/">
COPAC</a> - Online Public Access Catalogue by
the Consortium of University Research Libraries.
<li> <a target="_top" name="doaj" href="http://www.doaj.org/">
DOAJ</a> - Directory of Open Access Journals
<li> <font size="+1">
<a target="_top" name="pubmed" target="_top"
href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed">
PubMED</a></font>
<li> PubMed robot: [
<a target="_top" name="Biomail" href="http://www.biomail.org/">
Biomail</a> |
<a target="_top" name="Biomail" href="http://pubcrawler.gen.tcd.ie/www.html">
PubCrawler</a>
]
<!--
<a target="_top" name="igm" target="_top"
href="http://igm.nlm.nih.gov/">
GratefulMed</a> |
-->
<li> <a target="_top" name="ingenta" href="http://www.ingenta.com/">
ingenta</a> (formerly UnCover)
</ul>
<h3><a name="db_image">- Image database</a></h3>
<ul>
<li> <a target="_top" name="digitalact"
href="http://www.nih.go.jp/saj/DigitalAtlas/">
Digital Atlas of Actinomycetes</a>
<li> <a target="_top" href="http://ant.edb.miyakyo-u.ac.jp/INDEXE.HTM">
Japanese Ants Color Image Database</a>
<li> <a target="_top" href="http://protist.i.hosei.ac.jp/">
Protist Information Server</a> - So many images
</ul>
<h3><a name="db_other">- Others</a></h3>
<ul>
<li> Taxonomy:
<ul>
<li> <a target="_top" name="txsearch"
href="http://txsearch.ddbj.nig.ac.jp/top-e.html">
DDBJ</a>
<li> <a target="_top" name="ncbitax"
href="http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html">
NCBI</a>
<li> <a target="_top" href="http://www.dsmz.de/bactnom/">
Bacterial Nomenclature Up-To-Date</a>
<li> <a target="_top" href="http://www.bacterio.cict.fr/">
LBSN</a> - List of Bacterial names with Standing in Nomenclature
</ul>
<li> Patent:
<ul>
<li> <a target="_top" href="http://www.jpo.go.jp/index.htm">
Japan Patent Office</a>
<li> <a target="_top" href="http://www.uspto.gov/">
United States Patent and Trademark Office</a>
</ul>
<li> <a target="_top" name ="pdq" href="http://www.ncc.go.jp/cnet.html">
PDQ</a> - NCI's Physician Data Query database
<li> <a target="_top" name="puma" http://wit.mcs.anl.gov/WIT2/">
WIT (formerly PUMA)</a>
- a www-based system to support the curation of
function assignments made to genes and the development
of metabolic models.
<li> <a target="_top" href="http://www.ornl.gov/TechResources/Trans/hmepg.html">
Transgenic and Targeted Mutant Animal Database</a>
<li> <a target="_top" name="vis_human"
href="http://www.nlm.nih.gov/research/visible/visible_human.html">
Visible Human</a>
</ul>
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<address><a href="http://www.nih.go.jp/~jun/profile/">
Jun Ishikawa <jun@nih.go.jp></a></address>
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